diff --git a/common_features.mk b/common_features.mk
index d238b28124..109c50c5f4 100644
--- a/common_features.mk
+++ b/common_features.mk
@@ -421,10 +421,6 @@ ifeq ($(strip $(TERMINAL_ENABLE)), yes)
     OPT_DEFS += -DUSER_PRINT
 endif
 
-ifeq ($(strip $(USB_HID_ENABLE)), yes)
-    include $(TMK_DIR)/protocol/usb_hid.mk
-endif
-
 ifeq ($(strip $(WPM_ENABLE)), yes)
     SRC += $(QUANTUM_DIR)/wpm.c
     OPT_DEFS += -DWPM_ENABLE
@@ -458,6 +454,23 @@ ifeq ($(strip $(DIP_SWITCH_ENABLE)), yes)
     SRC += $(QUANTUM_DIR)/dip_switch.c
 endif
 
+VALID_MAGIC_TYPES := yes full lite
+BOOTMAGIC_ENABLE ?= no
+ifneq ($(strip $(BOOTMAGIC_ENABLE)), no)
+  ifeq ($(filter $(BOOTMAGIC_ENABLE),$(VALID_MAGIC_TYPES)),)
+    $(error BOOTMAGIC_ENABLE="$(BOOTMAGIC_ENABLE)" is not a valid type of magic)
+  endif
+  ifeq ($(strip $(BOOTMAGIC_ENABLE)), lite)
+      OPT_DEFS += -DBOOTMAGIC_LITE
+      QUANTUM_SRC += $(QUANTUM_DIR)/bootmagic/bootmagic_lite.c
+  else
+    OPT_DEFS += -DBOOTMAGIC_ENABLE
+    QUANTUM_SRC += $(QUANTUM_DIR)/bootmagic/bootmagic_full.c
+  endif
+endif
+COMMON_VPATH += $(QUANTUM_DIR)/bootmagic
+QUANTUM_SRC += $(QUANTUM_DIR)/bootmagic/magic.c
+
 VALID_CUSTOM_MATRIX_TYPES:= yes lite no
 
 CUSTOM_MATRIX ?= no
diff --git a/quantum/bootmagic/bootmagic.h b/quantum/bootmagic/bootmagic.h
new file mode 100644
index 0000000000..959750178d
--- /dev/null
+++ b/quantum/bootmagic/bootmagic.h
@@ -0,0 +1,24 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+#pragma once
+
+#if defined(BOOTMAGIC_ENABLE)
+#    include "bootmagic_full.h"
+#elif defined(BOOTMAGIC_LITE)
+#    include "bootmagic_lite.h"
+#endif
+
+void bootmagic(void);
diff --git a/tmk_core/common/bootmagic.c b/quantum/bootmagic/bootmagic_full.c
similarity index 74%
rename from tmk_core/common/bootmagic.c
rename to quantum/bootmagic/bootmagic_full.c
index c1b3adf94d..18c28cde8a 100644
--- a/tmk_core/common/bootmagic.c
+++ b/quantum/bootmagic/bootmagic_full.c
@@ -1,3 +1,18 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
 #include <stdint.h>
 #include <stdbool.h>
 #include "wait.h"
@@ -10,18 +25,35 @@
 #include "eeconfig.h"
 #include "bootmagic.h"
 
-keymap_config_t keymap_config;
-
-/** \brief Bootmagic
+/** \brief Scan Keycode
  *
  * FIXME: needs doc
  */
-void bootmagic(void) {
-    /* check signature */
-    if (!eeconfig_is_enabled()) {
-        eeconfig_init();
+static bool scan_keycode(uint8_t keycode) {
+    for (uint8_t r = 0; r < MATRIX_ROWS; r++) {
+        matrix_row_t matrix_row = matrix_get_row(r);
+        for (uint8_t c = 0; c < MATRIX_COLS; c++) {
+            if (matrix_row & ((matrix_row_t)1 << c)) {
+                if (keycode == keymap_key_to_keycode(0, (keypos_t){.row = r, .col = c})) {
+                    return true;
+                }
+            }
+        }
     }
+    return false;
+}
 
+/** \brief Bootmagic Scan Keycode
+ *
+ * FIXME: needs doc
+ */
+static bool bootmagic_scan_keycode(uint8_t keycode) {
+    if (!scan_keycode(BOOTMAGIC_KEY_SALT)) return false;
+
+    return scan_keycode(keycode);
+}
+
+void bootmagic(void) {
     /* do scans in case of bounce */
     print("bootmagic scan: ... ");
     uint8_t scan = 100;
@@ -46,8 +78,6 @@ void bootmagic(void) {
         bootloader_jump();
     }
 
-    /* debug enable */
-    debug_config.raw = eeconfig_read_debug();
     if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEBUG_ENABLE)) {
         if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEBUG_MATRIX)) {
             debug_config.matrix = !debug_config.matrix;
@@ -61,8 +91,6 @@ void bootmagic(void) {
     }
     eeconfig_update_debug(debug_config.raw);
 
-    /* keymap config */
-    keymap_config.raw = eeconfig_read_keymap();
     if (bootmagic_scan_keycode(BOOTMAGIC_KEY_SWAP_CONTROL_CAPSLOCK)) {
         keymap_config.swap_control_capslock = !keymap_config.swap_control_capslock;
     }
@@ -94,70 +122,34 @@ void bootmagic(void) {
     if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_0)) {
         default_layer |= (1 << 0);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_1)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_1)) {
         default_layer |= (1 << 1);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_2)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_2)) {
         default_layer |= (1 << 2);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_3)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_3)) {
         default_layer |= (1 << 3);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_4)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_4)) {
         default_layer |= (1 << 4);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_5)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_5)) {
         default_layer |= (1 << 5);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_6)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_6)) {
         default_layer |= (1 << 6);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_7)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_DEFAULT_LAYER_7)) {
         default_layer |= (1 << 7);
     }
-    if (default_layer) {
-        eeconfig_update_default_layer(default_layer);
-        default_layer_set((layer_state_t)default_layer);
-    } else {
-        default_layer = eeconfig_read_default_layer();
-        default_layer_set((layer_state_t)default_layer);
-    }
-    /* Also initialize layer state to trigger callback functions for layer_state */
-    layer_state_set_kb((layer_state_t)layer_state);
+    eeconfig_update_default_layer(default_layer);
 
     /* EE_HANDS handedness */
     if (bootmagic_scan_keycode(BOOTMAGIC_KEY_EE_HANDS_LEFT)) {
         eeconfig_update_handedness(true);
     }
-    if (bootmagic_scan_keycode(BOOTMAGIC_KEY_EE_HANDS_RIGHT)) {
+    else if (bootmagic_scan_keycode(BOOTMAGIC_KEY_EE_HANDS_RIGHT)) {
         eeconfig_update_handedness(false);
     }
 }
-
-/** \brief Scan Keycode
- *
- * FIXME: needs doc
- */
-static bool scan_keycode(uint8_t keycode) {
-    for (uint8_t r = 0; r < MATRIX_ROWS; r++) {
-        matrix_row_t matrix_row = matrix_get_row(r);
-        for (uint8_t c = 0; c < MATRIX_COLS; c++) {
-            if (matrix_row & ((matrix_row_t)1 << c)) {
-                if (keycode == keymap_key_to_keycode(0, (keypos_t){.row = r, .col = c})) {
-                    return true;
-                }
-            }
-        }
-    }
-    return false;
-}
-
-/** \brief Bootmagic Scan Keycode
- *
- * FIXME: needs doc
- */
-bool bootmagic_scan_keycode(uint8_t keycode) {
-    if (!scan_keycode(BOOTMAGIC_KEY_SALT)) return false;
-
-    return scan_keycode(keycode);
-}
diff --git a/tmk_core/common/bootmagic.h b/quantum/bootmagic/bootmagic_full.h
similarity index 79%
rename from tmk_core/common/bootmagic.h
rename to quantum/bootmagic/bootmagic_full.h
index 8209d0194f..28f914c1b6 100644
--- a/tmk_core/common/bootmagic.h
+++ b/quantum/bootmagic/bootmagic_full.h
@@ -1,3 +1,19 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+
 #pragma once
 
 /* FIXME: Add special doxygen comments for defines here. */
@@ -96,7 +112,4 @@
 #endif
 #ifndef BOOTMAGIC_KEY_DEFAULT_LAYER_7
 #    define BOOTMAGIC_KEY_DEFAULT_LAYER_7 KC_7
-#endif
-
-void bootmagic(void);
-bool bootmagic_scan_keycode(uint8_t keycode);
+#endif
\ No newline at end of file
diff --git a/tmk_core/common/bootmagic_lite.c b/quantum/bootmagic/bootmagic_lite.c
similarity index 65%
rename from tmk_core/common/bootmagic_lite.c
rename to quantum/bootmagic/bootmagic_lite.c
index cbf756a175..9cbdcb0bbd 100644
--- a/tmk_core/common/bootmagic_lite.c
+++ b/quantum/bootmagic/bootmagic_lite.c
@@ -1,3 +1,18 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
 #include "quantum.h"
 
 /** \brief Reset eeprom
@@ -47,3 +62,5 @@ __attribute__((weak)) void bootmagic_lite(void) {
         bootloader_jump();
     }
 }
+
+void bootmagic(void) { bootmagic_lite(); }
diff --git a/quantum/bootmagic/bootmagic_lite.h b/quantum/bootmagic/bootmagic_lite.h
new file mode 100644
index 0000000000..17777e6b4a
--- /dev/null
+++ b/quantum/bootmagic/bootmagic_lite.h
@@ -0,0 +1,25 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+#pragma once
+
+#ifndef BOOTMAGIC_LITE_COLUMN
+#    define BOOTMAGIC_LITE_COLUMN 0
+#endif
+#ifndef BOOTMAGIC_LITE_ROW
+#    define BOOTMAGIC_LITE_ROW 0
+#endif
+
+void bootmagic_lite(void);
diff --git a/quantum/bootmagic/magic.c b/quantum/bootmagic/magic.c
new file mode 100644
index 0000000000..f1cb11c395
--- /dev/null
+++ b/quantum/bootmagic/magic.c
@@ -0,0 +1,54 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+#include <stdint.h>
+#include <stdbool.h>
+#include "wait.h"
+#include "matrix.h"
+#include "bootloader.h"
+#include "debug.h"
+#include "keymap.h"
+#include "host.h"
+#include "action_layer.h"
+#include "eeconfig.h"
+#include "bootmagic.h"
+
+keymap_config_t keymap_config;
+
+__attribute__((weak)) void bootmagic(void) {}
+
+/** \brief Magic
+ *
+ * FIXME: Needs doc
+ */
+void magic(void) {
+    /* check signature */
+    if (!eeconfig_is_enabled()) {
+        eeconfig_init();
+    }
+
+    /* init globals */
+    debug_config.raw  = eeconfig_read_debug();
+    keymap_config.raw = eeconfig_read_keymap();
+
+    bootmagic();
+
+    /* read here just incase bootmagic process changed its value */
+    layer_state_t default_layer = (layer_state_t)eeconfig_read_default_layer();
+    default_layer_set(default_layer);
+
+    /* Also initialize layer state to trigger callback functions for layer_state */
+    layer_state_set_kb((layer_state_t)layer_state);
+}
diff --git a/quantum/bootmagic/magic.h b/quantum/bootmagic/magic.h
new file mode 100644
index 0000000000..2c3969b85c
--- /dev/null
+++ b/quantum/bootmagic/magic.h
@@ -0,0 +1,18 @@
+/* Copyright 2021 QMK
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ */
+#pragma once
+
+void magic(void);
diff --git a/quantum/quantum.c b/quantum/quantum.c
index db99e80fa0..7345ab0d5a 100644
--- a/quantum/quantum.c
+++ b/quantum/quantum.c
@@ -16,6 +16,7 @@
 
 #include <ctype.h>
 #include "quantum.h"
+#include "magic.h"
 
 #ifdef BLUETOOTH_ENABLE
 #    include "outputselect.h"
@@ -601,12 +602,7 @@ void tap_random_base64(void) {
 }
 
 void matrix_init_quantum() {
-#ifdef BOOTMAGIC_LITE
-    bootmagic_lite();
-#endif
-    if (!eeconfig_is_enabled()) {
-        eeconfig_init();
-    }
+    magic();
 #if defined(LED_NUM_LOCK_PIN) || defined(LED_CAPS_LOCK_PIN) || defined(LED_SCROLL_LOCK_PIN) || defined(LED_COMPOSE_PIN) || defined(LED_KANA_PIN)
     // TODO: remove calls to led_init_ports from keyboards and remove ifdef
     led_init_ports();
diff --git a/quantum/quantum.h b/quantum/quantum.h
index 36a983d575..7bb6e796e8 100644
--- a/quantum/quantum.h
+++ b/quantum/quantum.h
@@ -52,6 +52,7 @@
 #include "action_layer.h"
 #include "eeconfig.h"
 #include "bootloader.h"
+#include "bootmagic.h"
 #include "timer.h"
 #include "sync_timer.h"
 #include "config_common.h"
@@ -283,15 +284,6 @@ bool     process_record_user(uint16_t keycode, keyrecord_t *record);
 void     post_process_record_kb(uint16_t keycode, keyrecord_t *record);
 void     post_process_record_user(uint16_t keycode, keyrecord_t *record);
 
-#ifndef BOOTMAGIC_LITE_COLUMN
-#    define BOOTMAGIC_LITE_COLUMN 0
-#endif
-#ifndef BOOTMAGIC_LITE_ROW
-#    define BOOTMAGIC_LITE_ROW 0
-#endif
-
-void bootmagic_lite(void);
-
 void reset_keyboard(void);
 
 void startup_user(void);
diff --git a/tmk_core/common.mk b/tmk_core/common.mk
index 238b3c69fd..c2fc522cea 100644
--- a/tmk_core/common.mk
+++ b/tmk_core/common.mk
@@ -24,28 +24,6 @@ else
     include $(TMK_PATH)/$(COMMON_DIR)/lib_printf.mk
 endif
 
-# Option modules
-BOOTMAGIC_ENABLE ?= no
-VALID_MAGIC_TYPES := yes full lite
-ifneq ($(strip $(BOOTMAGIC_ENABLE)), no)
-  ifeq ($(filter $(BOOTMAGIC_ENABLE),$(VALID_MAGIC_TYPES)),)
-    $(error BOOTMAGIC_ENABLE="$(BOOTMAGIC_ENABLE)" is not a valid type of magic)
-  endif
-  ifeq ($(strip $(BOOTMAGIC_ENABLE)), lite)
-      TMK_COMMON_DEFS += -DBOOTMAGIC_LITE
-      TMK_COMMON_SRC += $(COMMON_DIR)/bootmagic_lite.c
-
-      TMK_COMMON_DEFS += -DMAGIC_ENABLE
-      TMK_COMMON_SRC += $(COMMON_DIR)/magic.c
-  else
-    TMK_COMMON_DEFS += -DBOOTMAGIC_ENABLE
-    TMK_COMMON_SRC += $(COMMON_DIR)/bootmagic.c
-  endif
-else
-    TMK_COMMON_DEFS += -DMAGIC_ENABLE
-    TMK_COMMON_SRC += $(COMMON_DIR)/magic.c
-endif
-
 SHARED_EP_ENABLE = no
 MOUSE_SHARED_EP ?= yes
 ifeq ($(strip $(KEYBOARD_SHARED_EP)), yes)
diff --git a/tmk_core/common/keyboard.c b/tmk_core/common/keyboard.c
index ce3255c069..65d9e00c7a 100644
--- a/tmk_core/common/keyboard.c
+++ b/tmk_core/common/keyboard.c
@@ -34,11 +34,6 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 #ifdef BACKLIGHT_ENABLE
 #    include "backlight.h"
 #endif
-#ifdef BOOTMAGIC_ENABLE
-#    include "bootmagic.h"
-#else
-#    include "magic.h"
-#endif
 #ifdef MOUSEKEY_ENABLE
 #    include "mousekey.h"
 #endif
@@ -296,11 +291,6 @@ void keyboard_init(void) {
 #ifdef ADB_MOUSE_ENABLE
     adb_mouse_init();
 #endif
-#ifdef BOOTMAGIC_ENABLE
-    bootmagic();
-#else
-    magic();
-#endif
 #ifdef BACKLIGHT_ENABLE
     backlight_init();
 #endif
diff --git a/tmk_core/common/magic.c b/tmk_core/common/magic.c
deleted file mode 100644
index e14994164e..0000000000
--- a/tmk_core/common/magic.c
+++ /dev/null
@@ -1,39 +0,0 @@
-#include <stdint.h>
-#include <stdbool.h>
-#if defined(__AVR__)
-#    include <util/delay.h>
-#endif
-#include "matrix.h"
-#include "bootloader.h"
-#include "debug.h"
-#include "keymap.h"
-#include "host.h"
-#include "action_layer.h"
-#include "eeconfig.h"
-#include "magic.h"
-
-keymap_config_t keymap_config;
-
-/** \brief Magic
- *
- * FIXME: Needs doc
- */
-void magic(void) {
-    /* check signature */
-    if (!eeconfig_is_enabled()) {
-        eeconfig_init();
-    }
-
-    /* debug enable */
-    debug_config.raw = eeconfig_read_debug();
-
-    /* keymap config */
-    keymap_config.raw = eeconfig_read_keymap();
-
-    uint8_t default_layer = 0;
-    default_layer         = eeconfig_read_default_layer();
-    default_layer_set((layer_state_t)default_layer);
-
-    /* Also initialize layer state to trigger callback functions for layer_state */
-    layer_state_set_kb((layer_state_t)layer_state);
-}
diff --git a/tmk_core/common/magic.h b/tmk_core/common/magic.h
deleted file mode 100644
index a6552c04dc..0000000000
--- a/tmk_core/common/magic.h
+++ /dev/null
@@ -1,3 +0,0 @@
-#pragma once
-
-void magic(void);
diff --git a/tmk_core/protocol.mk b/tmk_core/protocol.mk
index 0c41642b9b..cc87e83478 100644
--- a/tmk_core/protocol.mk
+++ b/tmk_core/protocol.mk
@@ -54,5 +54,9 @@ ifeq ($(strip $(XT_ENABLE)), yes)
     OPT_DEFS += -DXT_ENABLE
 endif
 
+ifeq ($(strip $(USB_HID_ENABLE)), yes)
+    include $(TMK_DIR)/protocol/usb_hid.mk
+endif
+
 # Search Path
 VPATH += $(TMK_DIR)/protocol