diff --git a/keyboards/atom47/rev2/keymaps/LEdiodes/keymap.c b/keyboards/atom47/keymaps/LEdiodes/keymap.c
similarity index 100%
rename from keyboards/atom47/rev2/keymaps/LEdiodes/keymap.c
rename to keyboards/atom47/keymaps/LEdiodes/keymap.c
diff --git a/keyboards/atom47/rev2/keymaps/LEdiodes/rules.mk b/keyboards/atom47/keymaps/LEdiodes/rules.mk
similarity index 100%
rename from keyboards/atom47/rev2/keymaps/LEdiodes/rules.mk
rename to keyboards/atom47/keymaps/LEdiodes/rules.mk
diff --git a/keyboards/atom47/config.h b/keyboards/atom47/rev1/config.h
similarity index 94%
rename from keyboards/atom47/config.h
rename to keyboards/atom47/rev1/config.h
index 5743a9eb53..d21d8ce34d 100644
--- a/keyboards/atom47/config.h
+++ b/keyboards/atom47/rev1/config.h
@@ -15,8 +15,8 @@ You should have received a copy of the GNU General Public License
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
 
-#ifndef CONFIG_H
-#define CONFIG_H
+#ifndef REV1_CONFIG_H
+#define REV1_CONFIG_H
 
 #include "config_common.h"
 
@@ -26,7 +26,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 #define DEVICE_VER      0x0003
 #define MANUFACTURER    Vortex
 #define PRODUCT         Core
-#define DESCRIPTION     Atom47 PCB for the Vortex Core
+#define DESCRIPTION     Atom47 PCB for the Vortex Core Rev.1
 
 /* key matrix size */
 #define MATRIX_ROWS 4
diff --git a/keyboards/atom47/info.json b/keyboards/atom47/rev1/info.json
similarity index 100%
rename from keyboards/atom47/info.json
rename to keyboards/atom47/rev1/info.json
diff --git a/keyboards/atom47/atom47.c b/keyboards/atom47/rev1/rev1.c
similarity index 95%
rename from keyboards/atom47/atom47.c
rename to keyboards/atom47/rev1/rev1.c
index fac22f7786..816b43b9ab 100644
--- a/keyboards/atom47/atom47.c
+++ b/keyboards/atom47/rev1/rev1.c
@@ -1,4 +1,4 @@
-#include "atom47.h"
+#include "rev1.h"
 #include "led.h"
 
 void matrix_init_kb(void) {
diff --git a/keyboards/atom47/atom47.h b/keyboards/atom47/rev1/rev1.h
similarity index 84%
rename from keyboards/atom47/atom47.h
rename to keyboards/atom47/rev1/rev1.h
index eddc5c8f87..f8329a7842 100644
--- a/keyboards/atom47/atom47.h
+++ b/keyboards/atom47/rev1/rev1.h
@@ -1,12 +1,12 @@
-#ifndef ATOM47_H
-#define ATOM47_H
+#ifndef ATOM47_REV1_H
+#define ATOM47_REV1_H
 
 #include "quantum.h"
 
 // readability
 #define XXX KC_NO
 
-#define KEYMAP_ANSI( \
+#define LAYOUT_ansi( \
     k00, k01, k02, k03, k04, k05, k06, k07, k08, k09, k0a, k0b, k0c, \
 	k10, k11, k12, k13, k14, k15, k16, k17, k18, k19, k1a,      k1c, \
 	k20,      k22, k23, k24, k25, k26, k27, k28, k29, k2a, k2b, k2c, \
@@ -19,7 +19,5 @@
 	{k30, k31, k32, k33, XXX, k35, XXX, k37, XXX, k39, k3a, k3b, k3c}  \
 }
 
-void matrix_init_user(void);
-void matrix_scan_user(void);
 
 #endif
diff --git a/keyboards/atom47/rev1/rules.mk b/keyboards/atom47/rev1/rules.mk
new file mode 100644
index 0000000000..13e553b562
--- /dev/null
+++ b/keyboards/atom47/rev1/rules.mk
@@ -0,0 +1,2 @@
+NKRO_ENABLE = no		# USB Nkey Rollover - if this doesn't work, see here: https://github.com/tmk/tmk_keyboard/wiki/FAQ#nkro-doesnt-work
+RGBLIGHT_ENABLE = yes   # Enable keyboard underlight functionality (+4870)
diff --git a/keyboards/atom47/rev2/atom47.c b/keyboards/atom47/rev2/atom47.c
deleted file mode 100644
index 7b839e7967..0000000000
--- a/keyboards/atom47/rev2/atom47.c
+++ /dev/null
@@ -1,31 +0,0 @@
-#include "atom47.h"
-#include "led.h"
-
-void matrix_init_kb(void) {
-	// put your keyboard start-up code here
-	// runs once when the firmware starts up
-	matrix_init_user();
-	led_init_ports();
-};
-
-void matrix_scan_kb(void) {
-	// put your looping keyboard code here
-	// runs every cycle (a lot)
-	matrix_scan_user();
-};
-
-void led_init_ports(void) {
-    // * Set our LED pins as output
-    DDRB &= ~(1<<5);
-}
-
-void led_set_kb(uint8_t usb_led) {
-	if (usb_led & (1<<USB_LED_CAPS_LOCK)) {
-        // Turn capslock on
-        PORTF |= (1<<5);
-    } else {
-        // Turn capslock off
-        PORTF &= ~(1<<5);
-    }
-	led_set_user(usb_led);
-}
diff --git a/keyboards/atom47/rev2/atom47.h b/keyboards/atom47/rev2/atom47.h
deleted file mode 100644
index 2c19a20cc5..0000000000
--- a/keyboards/atom47/rev2/atom47.h
+++ /dev/null
@@ -1,25 +0,0 @@
-#ifndef ATOM47_H
-#define ATOM47_H
-
-#include "quantum.h"
-
-// readability
-#define XXX KC_NO
-
-#define KEYMAP_ANSI( \
-    k00, k01, k02, k03, k04, k05, k06, k07, k08, k09, k0a, k0b, k0c, \
-	k10, k11, k12, k13, k14, k15, k16, k17, k18, k19, k1a,      k1c, \
-	k20, k21, k22, k23, k24, k25, k26, k27, k28, k29, k2a,      k2c, \
-	k30, k31, k32, k33, k34,      k36,      k38, k39, k3a,      k3c \
-) \
-{ \
-    {k00, k01, k02, k03, k04, k05, k06, k07, k08, k09, k0a, k0b, k0c}, \
-	{k10, k11, k12, k13, k14, k15, k16, k17, k18, k19, k1a, XXX, k1c}, \
-	{k20, k21, k22, k23, k24, k25, k26, k27, k28, k29, k2a, XXX, k2c}, \
-	{k30, k31, k32, k33, k34, XXX, k36, XXX, k38, k39, k3a, XXX, k3c}  \
-}
-
-void matrix_init_user(void);
-void matrix_scan_user(void);
-
-#endif
diff --git a/keyboards/atom47/rev2/config.h b/keyboards/atom47/rev2/config.h
index 82e8baaefb..df21130d36 100644
--- a/keyboards/atom47/rev2/config.h
+++ b/keyboards/atom47/rev2/config.h
@@ -15,8 +15,8 @@ You should have received a copy of the GNU General Public License
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
 
-#ifndef CONFIG_H
-#define CONFIG_H
+#ifndef REV2_CONFIG_H
+#define REV2_CONFIG_H
 
 #include "config_common.h"
 
@@ -26,7 +26,7 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 #define DEVICE_VER      0x0003
 #define MANUFACTURER    Vortex
 #define PRODUCT         Core
-#define DESCRIPTION     Atom47 PCB for the Vortex Core
+#define DESCRIPTION     Atom47 PCB for the Vortex Core Rev.2
 
 /* key matrix size */
 #define MATRIX_ROWS 4
diff --git a/keyboards/atom47/rev2/keymaps/LEdiodes/config.h b/keyboards/atom47/rev2/keymaps/LEdiodes/config.h
deleted file mode 100644
index e054f27759..0000000000
--- a/keyboards/atom47/rev2/keymaps/LEdiodes/config.h
+++ /dev/null
@@ -1,74 +0,0 @@
-/*
-Copyright 2012 Maarten Dekkers <atomkeeb@gmail.com
-
-This program is free software: you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation, either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License
-along with this program.  If not, see <http://www.gnu.org/licenses/>.
-*/
-
-#ifndef CONFIG_H
-#define CONFIG_H
-
-#include "config_common.h"
-
-/* USB Device descriptor parameter */
-#define VENDOR_ID       0xFEED
-#define PRODUCT_ID      0x6060
-#define DEVICE_VER      0x0003
-#define MANUFACTURER    Vortex
-#define PRODUCT         Core
-#define DESCRIPTION     Atom47 PCB for the Vortex Core
-
-/* key matrix size */
-#define MATRIX_ROWS 4
-#define MATRIX_COLS 13
-
-// ROWS: Top to bottom, COLS: Left to right
-
-#define MATRIX_ROW_PINS {B1,B2,B3,B7}
-#define MATRIX_COL_PINS {D7,D5,F0,F1,F4,F6,F7,D4,C7,C6,D6,B5,B4}
-#define UNUSED_PINS
-
-#define BACKLIGHT_PIN B6
-
-/* COL2ROW or ROW2COL */
-#define DIODE_DIRECTION COL2ROW
-
-/* define if matrix has ghost */
-//#define MATRIX_HAS_GHOST
-
-/* Set 0 if debouncing isn't needed */
-#define DEBOUNCING_DELAY 5
-
-/* Mechanical locking support. Use KC_LCAP, KC_LNUM or KC_LSCR instead in keymap */
-#define LOCKING_SUPPORT_ENABLE
-/* Locking resynchronize hack */
-#define LOCKING_RESYNC_ENABLE
-
-/* key combination for command */
-#define IS_COMMAND() ( \
-    keyboard_report->mods == (MOD_BIT(KC_LSHIFT) | MOD_BIT(KC_RSHIFT)) \
-)
-
-/* Backlight configuration
- */
-#define BACKLIGHT_LEVELS 4
-
-#define RGB_DI_PIN D0    // The pin the LED strip is connected to
-#define RGBLED_NUM 1     // Number of LEDs in your strip
-
-#define QMK_ESC_OUTPUT D7 // usually COL
-#define QMK_ESC_INPUT B1 // usually ROW
-#define QMK_LED B6
-
-#endif
-
diff --git a/keyboards/atom47/rev2/keymaps/default/keymap.c b/keyboards/atom47/rev2/keymaps/default/keymap.c
deleted file mode 100644
index 5f74416ce0..0000000000
--- a/keyboards/atom47/rev2/keymaps/default/keymap.c
+++ /dev/null
@@ -1,39 +0,0 @@
-#include QMK_KEYBOARD_H
-
-// Each layer gets a name for readability, which is then used in the keymap matrix below.
-// The underscores don't mean anything - you can have a layer called STUFF or any other name.
-// Layer names don't all need to be of the same length, obviously, and you can also skip them
-// entirely and just use numbers.
-
-#define _MA 0 //Main layer
-#define _FN 1 //Fn
-#define _FN1 2 //Fn1
-#define _PN 3 //Pn
-
-#define _______ KC_TRNS
-
-const uint16_t PROGMEM keymaps[][MATRIX_ROWS][MATRIX_COLS] = {
-[_MA] = LAYOUT_ansi(
-  KC_ESC,		KC_Q,		KC_W,		KC_E,		KC_R,		KC_T,		KC_Y,		KC_U,		KC_I,		KC_O,		KC_P,		KC_DEL,		KC_BSPC,	\
-  KC_TAB,		KC_A,		KC_S,		KC_D,		KC_F,		KC_G,		KC_H,		KC_J,		KC_K,		KC_L,		KC_SCLN,				KC_ENT,  	\
-  KC_LSFT,		KC_Z,		KC_X,		KC_C,		KC_V,		KC_B,		KC_N,		KC_M,		KC_COMM,	KC_DOT,		KC_RSFT,				MO(_FN1),	\
-  KC_LCTL,		KC_LGUI,	KC_LALT,	MO(_PN),	KC_SPC, 				KC_SPC,					MO(_FN),	KC_RALT,	KC_APP,					KC_RCTRL),	\
- 
-[_FN] = LAYOUT_ansi(
-  _______,		KC_VOLD,	KC_VOLU,	KC_MUTE,	RESET,		_______,	KC_CALC,	KC_PGUP,	KC_UP,		KC_PGDN,	KC_PSCR,	KC_SLCK,	KC_PAUS,	\
-  KC_CAPS,		KC_MPRV,	KC_MPLY,	KC_MNXT,	_______,	_______,	KC_HOME,	KC_LEFT,	KC_DOWN,	KC_RIGHT,	KC_INS,					_______,	\
-  _______,		_______,	_______,	_______,	_______,	_______,	_______,	BL_TOGG,	BL_DEC,		BL_INC,		_______,				_______,	\
-  _______,		_______,	_______,	_______,	_______, 				_______,				_______,	_______,	_______,				_______),	\
- 
-[_FN1] = LAYOUT_ansi(
-  KC_GRV,		KC_F1,		KC_F2,		KC_F3,		KC_F4,		KC_F5,		KC_F6,		KC_F7,		KC_F8,		KC_F9,		KC_F10,		KC_F11,		KC_F12,		\
-  KC_1,			KC_2,		KC_3,		KC_4,		KC_5,		KC_6,		KC_7,		KC_8,		KC_9,		KC_0,		KC_MINS,				KC_EQL,		\
-  _______,		_______,	_______,	_______,	_______,	KC_QUOT,	KC_SLSH,	KC_LBRC,	KC_RBRC,	KC_BSLS,	KC_RSFT,				_______,	\
-  _______,		_______,	_______,	_______,	_______, 				_______,				_______,	_______,	_______,				_______),	\
- 
-[_PN] = LAYOUT_ansi(
-  _______,		_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	\
-  _______,		_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,				_______,	\
-  _______,		_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,	_______,				_______,	\
-  _______,		_______,	_______,	_______,	_______, 				_______,				_______,	_______,	_______,				RESET),
-};
diff --git a/keyboards/atom47/rev2/keymaps/default/readme.md b/keyboards/atom47/rev2/keymaps/default/readme.md
deleted file mode 100644
index ab86b4f128..0000000000
--- a/keyboards/atom47/rev2/keymaps/default/readme.md
+++ /dev/null
@@ -1 +0,0 @@
-This is the default keymap as found on the Vortex Core, with some added buttons for backlight control.
diff --git a/keyboards/atom47/rev2/keymaps/LEdiodes/atom47.c b/keyboards/atom47/rev2/rev2.c
similarity index 96%
rename from keyboards/atom47/rev2/keymaps/LEdiodes/atom47.c
rename to keyboards/atom47/rev2/rev2.c
index 7b839e7967..31a8561f0c 100644
--- a/keyboards/atom47/rev2/keymaps/LEdiodes/atom47.c
+++ b/keyboards/atom47/rev2/rev2.c
@@ -1,4 +1,4 @@
-#include "atom47.h"
+#include "rev2.h"
 #include "led.h"
 
 void matrix_init_kb(void) {
diff --git a/keyboards/atom47/rev2/keymaps/LEdiodes/atom47.h b/keyboards/atom47/rev2/rev2.h
similarity index 96%
rename from keyboards/atom47/rev2/keymaps/LEdiodes/atom47.h
rename to keyboards/atom47/rev2/rev2.h
index 2c19a20cc5..f0134511da 100644
--- a/keyboards/atom47/rev2/keymaps/LEdiodes/atom47.h
+++ b/keyboards/atom47/rev2/rev2.h
@@ -6,7 +6,7 @@
 // readability
 #define XXX KC_NO
 
-#define KEYMAP_ANSI( \
+#define LAYOUT_ansi( \
     k00, k01, k02, k03, k04, k05, k06, k07, k08, k09, k0a, k0b, k0c, \
 	k10, k11, k12, k13, k14, k15, k16, k17, k18, k19, k1a,      k1c, \
 	k20, k21, k22, k23, k24, k25, k26, k27, k28, k29, k2a,      k2c, \
diff --git a/keyboards/atom47/rev2/rules.mk b/keyboards/atom47/rev2/rules.mk
index d446d3a699..a3a258ed82 100644
--- a/keyboards/atom47/rev2/rules.mk
+++ b/keyboards/atom47/rev2/rules.mk
@@ -1,65 +1,3 @@
-# MCU name
-#MCU = at90usb1287
-MCU = atmega32u4
 
-# Processor frequency.
-#     This will define a symbol, F_CPU, in all source code files equal to the
-#     processor frequency in Hz. You can then use this symbol in your source code to
-#     calculate timings. Do NOT tack on a 'UL' at the end, this will be done
-#     automatically to create a 32-bit value in your source code.
-#
-#     This will be an integer division of F_USB below, as it is sourced by
-#     F_USB after it has run through any CPU prescalers. Note that this value
-#     does not *change* the processor frequency - it should merely be updated to
-#     reflect the processor speed set externally so that the code can use accurate
-#     software delays.
-F_CPU = 16000000
-
-
-#
-# LUFA specific
-#
-# Target architecture (see library "Board Types" documentation).
-ARCH = AVR8
-
-# Input clock frequency.
-#     This will define a symbol, F_USB, in all source code files equal to the
-#     input clock frequency (before any prescaling is performed) in Hz. This value may
-#     differ from F_CPU if prescaling is used on the latter, and is required as the
-#     raw input clock is fed directly to the PLL sections of the AVR for high speed
-#     clock generation for the USB and other AVR subsections. Do NOT tack on a 'UL'
-#     at the end, this will be done automatically to create a 32-bit value in your
-#     source code.
-#
-#     If no clock division is performed on the input clock inside the AVR (via the
-#     CPU clock adjust registers or the clock division fuses), this will be equal to F_CPU.
-F_USB = $(F_CPU)
-
-# Interrupt driven control endpoint task(+60)
-OPT_DEFS += -DINTERRUPT_CONTROL_ENDPOINT
-
-
-# Boot Section Size in *bytes*
-#   Teensy halfKay   512
-#   Teensy++ halfKay 1024
-#   Atmel DFU loader 4096
-#   LUFA bootloader  4096
-#   USBaspLoader     2048
-OPT_DEFS += -DBOOTLOADER_SIZE=4096
-
-
-# Build Options
-#   comment out to disable the options.
-#
-BOOTMAGIC_ENABLE = no	# Virtual DIP switch configuration(+1000)
-MOUSEKEY_ENABLE = no	# Mouse keys(+4700)
-EXTRAKEY_ENABLE = yes	# Audio control and System control(+450)
-CONSOLE_ENABLE = no	# Console for debug(+400)
-COMMAND_ENABLE = no    # Commands for debug and configuration
 NKRO_ENABLE = yes		# USB Nkey Rollover - if this doesn't work, see here: https://github.com/tmk/tmk_keyboard/wiki/FAQ#nkro-doesnt-work
 RGBLIGHT_ENABLE = no   # Enable keyboard underlight functionality (+4870)
-BACKLIGHT_ENABLE = yes  # Enable keyboard backlight functionality (+1150)
-MIDI_ENABLE = no 		# MIDI controls
-AUDIO_ENABLE = no
-UNICODE_ENABLE = no 		# Unicode
-BLUETOOTH_ENABLE = no # Enable Bluetooth with the Adafruit EZ-Key HID
diff --git a/keyboards/atom47/rules.mk b/keyboards/atom47/rules.mk
index 9b3263afd6..bebdb98d62 100644
--- a/keyboards/atom47/rules.mk
+++ b/keyboards/atom47/rules.mk
@@ -45,8 +45,8 @@ OPT_DEFS += -DINTERRUPT_CONTROL_ENDPOINT
 #   Atmel DFU loader 4096
 #   LUFA bootloader  4096
 #   USBaspLoader     2048
-OPT_DEFS += -DBOOTLOADER_SIZE=4096
-
+# OPT_DEFS += -DBOOTLOADER_SIZE=4096
+BOOTLOADER= qmk-dfu
 
 # Build Options
 #   comment out to disable the options.
@@ -56,10 +56,11 @@ MOUSEKEY_ENABLE = no	# Mouse keys(+4700)
 EXTRAKEY_ENABLE = yes	# Audio control and System control(+450)
 CONSOLE_ENABLE = no	# Console for debug(+400)
 COMMAND_ENABLE = no    # Commands for debug and configuration
-NKRO_ENABLE = no		# USB Nkey Rollover - if this doesn't work, see here: https://github.com/tmk/tmk_keyboard/wiki/FAQ#nkro-doesnt-work
-RGBLIGHT_ENABLE = yes   # Enable keyboard underlight functionality (+4870)
 BACKLIGHT_ENABLE = yes  # Enable keyboard backlight functionality (+1150)
 MIDI_ENABLE = no 		# MIDI controls
 AUDIO_ENABLE = no
 UNICODE_ENABLE = no 		# Unicode
 BLUETOOTH_ENABLE = no # Enable Bluetooth with the Adafruit EZ-Key HID
+
+DEFAULT_FOLDER = atom47/rev2
+